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@Biomedical-Imaging-Group

Biomedical Imaging Group

The BIG pursues research on the development of new algorithms and mathematical tools for the advanced processing of medical and biological images

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  1. DeepSplines DeepSplines Public

    A learnable linear spline module (PyTorch)

    Python 4

  2. GlobalBioIm GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    MATLAB 93 37

  3. DeconvolutionLab2 DeconvolutionLab2 Public

    Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

    Java 70 15

  4. Generating-Sparse-Processes Generating-Sparse-Processes Public

    Jupyter Notebook 1 1

Repositories

Showing 10 of 29 repositories
  • IPLABs-distribution-2026 Public
    Biomedical-Imaging-Group/IPLABs-distribution-2026's past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Nov 5, 2026
  • OrientationJ Public

    Measure the orientation of fibers and structures in 2D images — ImageJ/Fiji plugins based on the gradient structure tensor, with docs, theory, assessment, and test images.

    Biomedical-Imaging-Group/OrientationJ's past year of commit activity
    Java 36 GPL-3.0 10 6 0 Updated Oct 23, 2026
  • psf_generator Public

    PSF Generator: a PyTorch-based library to simulate point spread functions for microscopes.

    Biomedical-Imaging-Group/psf_generator's past year of commit activity
    Python 31 MIT 2 2 0 Updated Sep 3, 2026
  • IPLABs-distribution-2025 Public
    Biomedical-Imaging-Group/IPLABs-distribution-2025's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 21, 2026
  • GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    Biomedical-Imaging-Group/GlobalBioIm's past year of commit activity
    MATLAB 93 GPL-3.0 37 8 (1 issue needs help) 0 Updated Feb 18, 2026
  • napari-psfgenerator Public
    Biomedical-Imaging-Group/napari-psfgenerator's past year of commit activity
    Python 7 MIT 0 0 0 Updated Oct 23, 2025
  • MolecularDiffusion_MiViT Public Forked from mimsilly/SPT_VisionModel

    MiViT — Self-Supervised Learning of Molecular Diffusion using Motion-Informed Vision Transformer

    Biomedical-Imaging-Group/MolecularDiffusion_MiViT's past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Aug 4, 2025
  • mri-reconstruction Public

    Matlab Framework for MRI Simulation and Reconstruction

    Biomedical-Imaging-Group/mri-reconstruction's past year of commit activity
    MATLAB 0 Unlicense 0 0 0 Updated Jul 23, 2025
  • realistic-analytical-phantom Public

    Simulation tools for the validation of MRI reconstruction software

    Biomedical-Imaging-Group/realistic-analytical-phantom's past year of commit activity
    MATLAB 1 Unlicense 0 0 0 Updated Jul 22, 2025
  • IPLABs-distribution-2024 Public
    Biomedical-Imaging-Group/IPLABs-distribution-2024's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated May 15, 2025
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