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DanielWendisch/README.md

Hi, I'm Daniel Wendisch

Physician-scientist working on human immunology and genetic variation. I'm a postdoc in John Tsang's lab at Yale (Center for Systems and Engineering Immunology), where I study how allelic expression changes over time. Before that I worked on macrophage responses in severe viral infection and lung fibrosis, at Charité and the Berlin Institute of Health.

danielwendisch.github.io · Google Scholar · New Haven, CT

Publication graph

Selected repositories

Repository What it is
rix_targets_scRNAseq Reproducible single-cell RNA-seq preprocessing with Nix ({rix}), {targets} and Quarto
go_graph Radial ggplot2 visualisation of GO enrichment as a term tree
quarto_snakemake_boilerplate Template: parameterised Quarto notebooks orchestrated by Snakemake
manteltext Analysis code for my dissertation framing text: BAL macrophages and blood monocytes in severe COVID-19
danielwendisch.github.io Source of my website

Tools I work with

R (Seurat, DESeq2, {targets}, ggplot2, Quarto) · Python (scCODA) · Snakemake and Nextflow · Nix · single-cell and bulk RNA-seq · allele-specific expression · statistical modelling

Pinned Loading

  1. danielwendisch.github.io danielwendisch.github.io Public

    Personal website

    HTML

  2. go_graph go_graph Public

    Radial ggplot2 visualisation of GO enrichment as a term tree

    R

  3. manteltext manteltext Public

    Analysis code for a dissertation framing text: BAL macrophages and blood monocytes in severe COVID-19

    PostScript

  4. quarto_snakemake_boilerplate quarto_snakemake_boilerplate Public

    Template: parameterised Quarto notebooks orchestrated by Snakemake

    R

  5. rix_targets_scRNAseq rix_targets_scRNAseq Public

    Reproducible single-cell RNA-seq preprocessing with Nix (rix), targets and Quarto

    R