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@OpenMS

OpenMS

OpenMS is an open-source software library for LC-MS data management and analysis
README.md

Welcome to @OpenMS!

@OpenMS is an open-source C++ software library for LC-MS data management and analysis with python wrappers (pyOpenMS), a large modular toolset and workflows for e.g., Galaxy, KNIME and nextflow.

Here's how to get started:

All Jobs Status

Repository Status
OpenMS Nightly
workflow
pyOpenMS pyOpenMS Wheels
Documentation Documentation Validation
openms.de Netlify Status
CDash (external server) build status

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  1. OpenMS OpenMS Public

    The codebase of the OpenMS project

    C++ 630 451

  2. THIRDPARTY THIRDPARTY Public

    External binary dependencies (e.g. search engine binaries) packaged in installers

    2 13

  3. streamlit-template streamlit-template Public

    Python 20 39

  4. pyopenms_viz pyopenms_viz Public

    Streamlining Mass Spectrometry Data Visualization with Pandas

    Jupyter Notebook 26 22

Repositories

Showing 10 of 53 repositories
  • OpenMS Public

    The codebase of the OpenMS project

    OpenMS/OpenMS's past year of commit activity
    C++ 630 451 100 (2 issues need help) 41 Updated Nov 15, 2026
  • FLASHApp Public
    OpenMS/FLASHApp's past year of commit activity
    Python 1 2 2 24 Updated Nov 15, 2026
  • quantms-web Public
    OpenMS/quantms-web's past year of commit activity
    Python 1 2 2 11 Updated Nov 15, 2026
  • streamlit-template Public
    OpenMS/streamlit-template's past year of commit activity
    Python 20 39 37 39 Updated Nov 15, 2026
  • OpenMS-benchmarking Public

    scripts to test how OpenMS performs

    OpenMS/OpenMS-benchmarking's past year of commit activity
    Python 1 1 4 3 Updated Nov 15, 2026
  • homebrew-openms Public

    Homebrew tap for OpenMS (nightly bottles)

    OpenMS/homebrew-openms's past year of commit activity
    Ruby 0 0 0 0 Updated Nov 15, 2026
  • umetaflow Public

    Graphical user interface for the UmetaFlow pipepline for the analysis of metabolomics LC-MS data.

    OpenMS/umetaflow's past year of commit activity
    Python 13 12 4 9 Updated Nov 14, 2026
  • nase-weis Public

    The code-base of the NASEWEIS streamlit app

    OpenMS/nase-weis's past year of commit activity
    Python 1 1 1 7 Updated Nov 14, 2026
  • pyopenms_viz Public

    Streamlining Mass Spectrometry Data Visualization with Pandas

    OpenMS/pyopenms_viz's past year of commit activity
    Jupyter Notebook 26 BSD-3-Clause 22 10 (1 issue needs help) 9 Updated Nov 14, 2026
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    OpenMS/bioconda-recipes's past year of commit activity
    Shell 0 MIT 4,249 0 0 Updated Nov 14, 2026
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