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@funkelab

Funke lab

Janelia Research Campus

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  1. gunpowder gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    Python 93 61

  2. lsd lsd Public

    🌈

    Python 70 43

  3. motile motile Public

    Multi-Object Tracking with Integer Linear Equations

    Python 42 6

  4. daisy daisy Public

    Block-wise task scheduling for large nD volumes.

    Python 34 18

  5. cellulus cellulus Public

    Unsupervised Instance Segmentation in Microscopy

    Python 28 5

  6. linajea linajea Public

    Python 20 7

Repositories

Showing 10 of 88 repositories
  • funkelab.github.io Public
    funkelab/funkelab.github.io's past year of commit activity
    TeX 0 MIT 0 0 0 Updated Oct 30, 2026
  • funtracks Public

    A data model for cell tracking with actions, undo history, and more!

    funkelab/funtracks's past year of commit activity
    Python 4 BSD-3-Clause 1 31 10 Updated Oct 29, 2026
  • funlib.persistence Public

    Interfaces for data (arrays and graphs) and storage formats (databases and file formats)

    funkelab/funlib.persistence's past year of commit activity
    Python 5 MIT 13 10 0 Updated Oct 29, 2026
  • daisy Public

    Block-wise task scheduling for large nD volumes.

    funkelab/daisy's past year of commit activity
    Python 34 MIT 18 9 4 Updated Oct 27, 2026
  • finn Public

    finn is (not) napari

    funkelab/finn's past year of commit activity
    Python 4 BSD-3-Clause 2 0 3 Updated Oct 26, 2026
  • quac Public

    Quantitative Attributions with Counterfactuals

    funkelab/quac's past year of commit activity
    Python 5 MIT 5 7 3 Updated Oct 15, 2026
  • hoct Public Forked from royerlab/hoct
    funkelab/hoct's past year of commit activity
    Python 0 MIT 5 0 0 Updated Oct 7, 2026
  • spatial_graph Public

    A spatial graph datastructure for python

    funkelab/spatial_graph's past year of commit activity
    Python 11 MIT 2 7 2 Updated Oct 5, 2026
  • motile_toolbox Public

    A toolbox for tracking with motile, including constructing candidate graphs and computing common features.

    funkelab/motile_toolbox's past year of commit activity
    Python 4 2 2 7 Updated Oct 5, 2026
  • gunpowder Public

    A library to facilitate machine learning on multi-dimensional images.

    funkelab/gunpowder's past year of commit activity
    Python 93 MIT 61 10 1 Updated Oct 5, 2026
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