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  1. mE-DIA mE-DIA Public

    Multi-enzyme DIA in a single injection: library-free, proteoform-aware proteomics pipeline and GUI, powered by DIA-NN

    Python 2

  2. DiffTestR DiffTestR Public

    Differential Expression Testing on precursor level

    R

  3. mqqc mqqc Public

    Convenience script for maxquant-based lcms quality control & interactive graphing

    R

  4. SECexplorer_hela_cc SECexplorer_hela_cc Public

    R Shiny app for exploring SEC-SWATH datasets (complex-centric)

    R

  5. MarcIsak/MSLibrarian MarcIsak/MSLibrarian Public

    MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics

    R 15

  6. CCprofiler/CCprofiler CCprofiler/CCprofiler Public

    Analysis of co-fractionation MS datasets

    R 13 14