Issues

• Does representing an amphitriploid (AAABBB) genome as an AB assembly affect QV?

  marbl/merqury#183 · Filter by author Yahagi-yz opened on Oct 26, 2026

• merqury.sh exits 0 with no QV/completeness output when meryl count on the assembly fails

  marbl/merqury#182 · Filter by author adamjohnwright opened on Oct 21, 2026

• Colour/fill palette order inconsistent between spectra plot types

  marbl/merqury#181 · Filter by author jackscanlan opened on Sep 3, 2026

• The size argument of element_rect() is deprecated as of ggplot2 3.4.0.

  marbl/merqury#180 · Filter by author peterjc opened on Jun 23, 2026

• -nan in completeness.stats

  marbl/merqury#179 · Filter by author QichenFU opened on Jun 9, 2026

• High QV value, but low completeness value

  marbl/merqury#178 · Filter by author zuodabin opened on Apr 16, 2026
  1

• Column Header for each file

  marbl/merqury#174 · Filter by author jennyp76 opened on Feb 23, 2026

• Using merqury to assess completeness of mobile elements

  marbl/merqury#173 · Filter by author EmeraldSama94 opened on Jan 20, 2026
  5

• Increase tolerable collision rate for low quality read libraries

  marbl/merqury#172 · Filter by author EmeraldSama94 opened on Dec 11, 2025
  3

• Addd PDF plot output option

  enhancement
  marbl/merqury#168 · Filter by author diekhans opened on Sep 25, 2025
  1

• file *.switch.bed

  marbl/merqury#167 · Filter by author cip25 opened on Sep 17, 2025
  1

• How to compare k-mer completeness between phased genomes

  marbl/merqury#166 · Filter by author desmodus1984 opened on Sep 16, 2025
  1

• Merqury run completes but no output QV files generated

  marbl/merqury#165 · Filter by author zhaoguochun1122-commits opened on Sep 9, 2025
  1

• data depth

  marbl/merqury#164 · Filter by author Wanjie-Feng opened on Sep 3, 2025
  1

• Improvement of xmax determination in plot_spectra_cn on high-depth data

  bug
  marbl/merqury#163 · Filter by author Yoonsung1203 opened on Aug 29, 2025

• Question Regarding Low QV from Illumina Data Evaluation Compared to HiFi Data

  marbl/merqury#161 · Filter by author C-YONG opened on May 17, 2025
  4

• issue with running merqury tool

  marbl/merqury#160 · Filter by author dasn588 opened on May 6, 2025
  2

• Triobinning and Hi-C

  marbl/merqury#159 · Filter by author AnaKurdadze opened on May 2, 2025
  1

• short read meryl vs long read meryl (different QV value)

  marbl/merqury#158 · Filter by author plant-assembler12 opened on May 1, 2025
  3

• polyploid QC

  marbl/merqury#157 · Filter by author rsandean opened on Apr 25, 2025
  1

• blob plot to understand hifiasm haplotype assemblies

  marbl/merqury#154 · Filter by author cahuparo opened on Mar 21, 2025
  1

• Can't interpret 'hap1.p_ctg.meryl': not a meryl command, option, or recognized input file.

  marbl/merqury#150 · Filter by author Eden-yike opened on Dec 23, 2024
  1

• erro

  marbl/merqury#149 · Filter by author jwli-code opened on Dec 19, 2024
  1

• Document of QV file

  marbl/merqury#148 · Filter by author ZexuanZhao opened on Dec 2, 2024
  1

• confusion on the results of hapmers.sh

  marbl/merqury#147 · Filter by author leon945945 opened on Nov 26, 2024
  7