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1. paste paste Public

   Probabilistic Alignment of Spatial Transcriptomics Experiments

   Python 106 22

2. hotnet2 hotnet2 Public

   HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network

   Python 102 43

3. GASTON GASTON Public

   GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data

   Python 77 16

4. THetA THetA Public

   Tumor Heterogeneity Analysis (THetA) and THetA2 are algorithms that estimate the tumor purity and clonal/subclonal copy number aberrations directly from high-throughput DNA sequencing data. This re…

   Python 76 29

5. hatchet hatchet Public

   HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, a…

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6. CalicoST CalicoST Public

   Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics

   Python 52 4