gtf

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

A collection of scripts and notes related to genomics and bioinformatics

A fully automated gene annotator from RNA-Seq expression data

Frequently used commands in bioinformatics

A python package and a set of shell commands to handle GTF files

Go / Golang Bioinformatics Library

Extract Sequence from Genome According to Annotation File

a lexicographically-based GTF/GFF sorter

fastest GTF/GFF-to-BED converter chilling around

Tools for querying and analysis of genomic data

process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED

high-performance BED-to-GTF converter written in Rust

Convert genome annotation GTF file into plain CSV format

Home of the Genomic Feature and Variation Ontology (GFVO)

🧬 GFFBase — Rust+DuckDB GFF3/GTF engine

Evolutionary Bioinformatics Toolkit (EBT)

A python library for constructing interval trees with associated exon/annotation information

A Rust library and CLI tool to handle genomic transcripts

Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.