sbgn

View biological networks via Cytoscape.js and sbgn-ml

A web application to visualize and edit pathway models

A web based visualization tool for process description maps in SBGN

Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

Libraries for the Systems Biology Graphical Notation (SBGN); Java and C++

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

A yFiles-based editor for SBGN diagrams written in Kotlin

Python library for SBGN

Web-service on cytoscape.js to layout graphs

Translation between CellDesigner-flavoured SBML and SBGN-ML

Translation between CellDesigner-flavoured SBML and SBGN-ML

Parsing and writing SBGN-ML files in javascript

Converting SBGN encoded pathways to the SIF file format

Converting SBGN-encoded pathways to the SIF file format

C++ Library for reading / writing SBGN-ML documents

yEd-flavored graphml <-> sbgnml

A graphical editor for systems biology models.

A simpler, more complete, less verbose, dev-friendly version of libsbgn

Independent Python, Rust, and R fCoSE-style layout adapters for SBGN-ML

Cross-species ontology and SBGN pathway maps for quantum-biological processes: identifier-bound nodes carrying radical-pair/Fe-S/flavin annotations with an explicit evidence tier, plus NASA OSDR data projection. Companion to a near-null magnetic field review.