Cross-graph transfer learning for link prediction based on Structural Alignment
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Apr 22, 2025 - Python
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structural-alignment
Here are 7 public repositories matching this topic...
Quantification of graph structure influence on link prediction and pre-hoc KGEM hyperparameter selection based on Structural Alignment
knowledge-graph hyperparameter-optimization graph-structure-learning knowledge-graph-embedding-models structural-alignment
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Jan 25, 2025 - Python
Differentiable, gradient-safe Kabsch (SVD) and Horn (quaternion) point-cloud alignment across NumPy, PyTorch, JAX, TensorFlow, and MLX.
computer-vision robotics tensorflow numpy protein-structure molecular-dynamics pytorch autograd computational-chemistry quaternion svd mlx rmsd point-cloud-registration differentiable jax kabsch umeyama structural-alignment rigid-body-transformation
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Aug 17, 2026 - Python
This repository defines the protocols for **Helix-TTD Identity & Custody**. It enforces a strict "No Orphaned Agents" policy by binding every AI agent to a cryptographic root held by a human custodian.
cryptography yubikey ed25519 ai-safety human-in-the-loop post-quantum digital-identity append-only verifiable-computing ai-governance constitutional-ai agentic-ai auditability sovereign-ai structural-alignment stateless-design helix-ttd cryptographic-custody no-orphaned-agents reef-substrate
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Dec 31, 2025 - Python
RNA structural alignment via multi-strategy TM-score optimization. Finds higher-scoring superpositions than USalign on 66% of pairs.
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Mar 26, 2026 - Python
Kabsch algorithm for optimal 3D molecular coordinates alignment, rigid translation, and RMSD distance calculation
mcp protein-structure computational-chemistry rmsd python-standard-library kabsch-algorithm coordinate-geometry agent-skills structural-alignment molecular-geometry 3d-superposition
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Sep 28, 2026 - Python
Profile HMM pipeline to find Kunitz-type protease inhibitor domains (Pfam PF00014).
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Oct 4, 2025 - Jupyter Notebook
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